A parsing tool for AMP tools.

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  • License: MIT License (LICENSE.txt)
  • Author: Anan Ibrahim, Louisa Perelo
  • Tags Proteomics, Antimicrobial peptides, MMSeqs2Standardization, Formatting, Functional annotation
  • Requires: Python ==3.11.*
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Project description

AMPcombi : A parsing, filtering and annotation workflow for tools predicting AntiMicrobial Peptide genes

License: MIT Install with Bioconda Install with Bioconda

AMPcombi and its submodules provide a command-line interface to:

  • parse the results of multiple antimicrobial peptide (AMP) prediction tools into a single table
  • align the AMP hits against a reference AMP database for functional and structural classifications
  • filter the AMP hits according to their physio-chemical properties
  • cluster the filtered AMP hits into AMP families
  • predict signaling peptides if present along the prepropeptide sequence

📕 The full documentation for AMPcombi can be accessed here.

📎 If you plan to use AMPcombi please don't forget to cite us 💚

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