ProDy 2.4.1
pip install ProDy
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A Python Package for Protein Dynamics Analysis
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- License: MIT License (MIT License)
- Author: James Krieger, She Zhang, Hongchun Li, Cihan Kaya, Ahmet Bakan, and others
- Tags protein, dynamics, elastic network model, Gaussian network model, anisotropic network model, essential dynamics analysis, principal component analysis, Protein Data Bank, PDB, GNM, ANM, SM, PCA
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SYNOPSIS
ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. ProDy also comes with several analysis applications and a graphical user interface for visual analysis.
GETTING PRODY
You can run ProDy on all major platforms. For download and installation instructions see:
DOCUMENTATION
Homepage: http://prody.csb.pitt.edu/
Tutorials: http://prody.csb.pitt.edu/tutorials
Reference: http://prody.csb.pitt.edu/manual
Applications: http://prody.csb.pitt.edu/manual/apps
NMWiz GUI: http://prody.csb.pitt.edu/nmwiz
SOURCE CODE
Source code: https://github.com/prody/ProDy
Issue tracker: https://github.com/prody/ProDy/issues
LICENSE
ProDy is available under MIT License. See LICENSE.txt for more details.
Biopython (http://biopython.org/) KDTree and TreeConstruction modules are distributed with ProDy. Biopython is developed by The Biopython Consortium and is available under the Biopython license (http://www.biopython.org/DIST/LICENSE).
Pyparsing (https://github.com/pyparsing/pyparsing) module is distributed with ProDy. Pyparsing is developed by Paul T. McGuire and is available under the MIT license (http://www.opensource.org/licenses/mit-license.php).
CEalign module (https://pymolwiki.org/index.php/Cealign_plugin) is distributed with ProDy. The original CE method was developed by Ilya Shindyalov and Philip Bourne. The Python version which is used by ProDy is developed by Jason Vertrees and available under the New BSD license.
Project details
Unverified details
These details have not been verified by PyPIProject links
Meta
- License: MIT License (MIT License)
- Author: James Krieger, She Zhang, Hongchun Li, Cihan Kaya, Ahmet Bakan, and others
- Tags protein, dynamics, elastic network model, Gaussian network model, anisotropic network model, essential dynamics analysis, principal component analysis, Protein Data Bank, PDB, GNM, ANM, SM, PCA
Classifiers
- Development Status
- Intended Audience
- License
- Operating System
- Programming Language
- Topic
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