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ivy-phylo 20111004
An interactive visual shell for phylogenetics
Latest Version: 20120228
ivy is a lightweight library and an interactive visual programming environment for phylogenetics. It is built on a powerful foundation of open-source software components, including numpy, scipy, matplotlib, and IPython.
ivy emphasizes interactive, exploratory visualization of phylogenetic trees. For example:
#!/usr/bin/env ipython
from ivy.interactive import *
root = readtree("primates.newick")
fig = treefig(root)
Documentation and other resources
Installation
- Install virtualenv.
- Install ivy: pip install ivy
| File | Type | Py Version | Uploaded on | Size | # downloads |
|---|---|---|---|---|---|
| ivy-phylo-20111004.tar.gz (md5) | Source | 2011-10-04 | 64KB | 254 | |
- Author: Richard Ree
- Home Page: http://www.reelab.net/ivy
- License: GPL
- Platform: All
- Package Index Owner: rree
- DOAP record: ivy-phylo-20111004.xml