nebgb 0.1.2

Genbank file parser.

Usage:

>>> import nebgb
>>> rec = nebgb.parse_file("./test/data/simple-1.gb").next()
>>> rec.locus["name"]
'NP_034640'
>>> rec.locus["length"]
182
>>> rec.keywords["source"]["name"]
'house mouse'
>>> rec.features[1]["properties"]["product"]
'interferon beta, fibroblast'
>>> for seq in rec.seqiter:
...    print seq
mnnrwilhaafllcfsttalsinykqlqlqertnirkcqelleqlngkinltyradfkip
memtekmqksytafaiqemlqnvflvfrnnfsstgwnetivvrlldelhqqtvflktvle
ekqeerltwemsstalhlksyywrvqrylklmkynsyawmvvraeifrnfliirrltrnf
qn

Alternatively you can use nebgb.parse() to parse a string or iterator that yields lines of a Genbank file.

• Author: Paul Joseph Davis <davisp at neb com>
• Home Page: http://github.com/davisp/nebgb
• Keywords: bioinformatics genbank parser
• License: MIT
• Platform: any
• Categories
  • Development Status :: 3 - Alpha
  • Intended Audience :: Developers
  • Intended Audience :: Science/Research
  • License :: OSI Approved :: MIT License
  • Natural Language :: English
  • Operating System :: OS Independent
  • Programming Language :: Python
  • Topic :: Scientific/Engineering :: Bio-Informatics
  • Topic :: Software Development :: Libraries :: Python Modules
• Package Index Owner: davisp
• DOAP record: nebgb-0.1.2.xml