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Username    endrebak
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24 projects

pyranges1

Last released

GenomicRanges for Python.

pyranges

Last released

GenomicRanges for Python.

pyrle

Last released

Numeric run length encoding for Python.

poranges

Last released

sorted-nearest

Last released

Find nearest intervals.

bwread

Last released

Read bigwig files into Python data science formats.

ncls

Last released

A fast interval tree-like implementation in C, wrapped for the Python ecosystem.

bamread

Last released

Read bam files quickly into dataframes in Python

epic2

Last released

Ultraperformant ChIP-Seq broad peak/domain finder.

pyranges-db

Last released

Database add-on for PyRanges.

piedpiper

Last released

Debug context manager for chained commands.

bioepic

Last released

Chip-Seq broad peak/domain finder.

sphinx-autorun-ebs

Last released

Sphinx extension autorun

clustertree

Last released

Clustertrees.

kerneltree

Last released

Ultrafast interval tree implementation.

kg

Last released

Access KEGG from the command line.

snpflip

Last released

Report reverse and ambiguous strand SNPs.

hdose

Last released

Harmonize exposure, outcome and dosage for Mendelian Randomization.

triform2

Last released

Improved sensitivity, specificity and control of false discovery rates in ChIP-Seq peak finding.

ebs

Last released

Various utils I use in more than one script/lib

goverlap

Last released

Powerful ontology term enrichment analyzer for the command line

biomartian

Last released

Access BioMart from the command line.

godb

Last released

A set of annotation maps describing most of the Gene Ontology.

widediaper

Last released

Simple, stable, easily debuggable R/Python piping

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