Skip to main content

A package for converting HGNC to BEL

Project description

This package creates:

  • HGNC BEL namespace

  • HGNC gene families BEL namespace,

  • HGNC gene family membership BEL Script

  • orthology BEL script

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_hgnc

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@master

Setup

HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()

Command Line Utility

bio2bel_hgnc populate

Citations

Acknowledgements

  • This package heavily relies on Andrej Konotopez’s package PyHGNC

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bio2bel_hgnc-0.3.0.tar.gz (27.1 kB view hashes)

Uploaded Source

Built Distribution

bio2bel_hgnc-0.3.0-py3-none-any.whl (20.5 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page