BioMAJ core library
Project description
Biomaj
Biomaj core library
Properties can be overriden by environment variables with pattern BIOMAJ_X_Y_Z for property x.y.z
Example:
use BIOMAJ_LDAP_HOST for ldap.host
3.0.28: use pytest instead of nose (deprecated) python3 only support
3.0.27: add .tgz extension support
3.0.26: check use_ldap and use_elastic as bool (true/false or 0/1)
3.0.25: utils/get_folder_size: if file not found, catch error and continue
3.0.24: get_more_recent_file, return also file info
3.0.23: PR #9 Add missing ssh defaults for download
3.0.21 [3.0.22 ,tag issue]: Pin elasticsearch dependency, v7 breaks some API calls
3.0.20: PR #7 from institut-de-genomique/retry_method, rename default values of retryer. Rename wait_condition to wait_policy in default values PR #6 from institut-de-genomique/retry_method, add default values for retryer Add default values for retryer (see the corresponding branch biomaj-download).
3.0.19: Add ftps and directftps protocols #4 Harden hardlinks copy_files_with_regexp: remove duplicates Add utils fonctions Code cleanup
3.0.18: Allow to use hardlinks in copy_files and copy_files_with_regexp
3.0.17: Fix --log option
3.0.16: Add some warnings if some file is missing
3.0.15: Fix check on bank properties config file when args is empty vs not defined
3.0.14: Fix checks on local_endpoint_XXX in config.yml In rabbitmq not defined on config.yml add an empty dict
3.0.13: Add archive integrity checks
3.0.12: Add irods support
3.0.11: Add get_module_version static method, checks module version and latest version on pypi Allow .args fo process to be empty
3.0.10: Add env variables WEB_LOCAL_ENDPOINT_XX with XX as a service (defined in utils.py Utils.services) to define an endpoint per service
3.0.9: #1 Add checks on bank properties
3.0.8: Add DOCKER_URL, MONGO_URL, MONGO_DB env variable in override Do not fail on elasticsearch index creation, just log Add rsync check
3.0.7: set logging only if necessary
3.0.6: Fix configparser import for python 2 vs 3
3.0.5: Add config override with env variables
3.0.4: Code cleanup
3.0.3: Put index management in core
3.0.2: Add missing deps
3.0.1: Add README etc..
3.0.0: separation of biomaj and biomaj_core
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