Project description

BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.

See the documentation for details on usage.

For an example of running BIRDMAn - see this Google Colab notebook.

Installation

Currently BIRDMAn requires Python 3.8 or higher.

We recommend using mamba for installation of dependencies.

mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman

Project details

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Development Status
- 3 - Alpha
Intended Audience
- Science/Research
License
- OSI Approved :: BSD License
Operating System
- MacOS :: MacOS X
- POSIX
Programming Language
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

This version

0.2.0

Oct 30, 2023

0.1.0

Jul 22, 2022

0.0.4

Jul 27, 2021

0.0.3

May 28, 2021

0.0.2

Apr 10, 2021

0.0.1

Apr 5, 2021

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birdman-0.2.0.tar.gz (20.8 kB view hashes)

Uploaded Oct 30, 2023 Source

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