coppaFISH software for Python

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License: MIT License (MIT)

Author: Josh Duffield

Maintainer: Reilly Tilbury

Requires: Python >=3.8

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Project description

coppafish

coppafish is a data analysis pipeline for decoding coppaFISH (combinatorial padlock-probe-amplified fluorescence in situ hybridization) datasets. coppaFISH is a method for in situ transcriptomics which produces a series of images arranged in terms of tiles, rounds and channels. coppafish then determines the distribution of genes via image processing, spot detection, registration and gene calling.

Prerequisites

Python >= 3.8

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For more information on installation and usage, please see the documentation.

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Avatar for jduffield65 from gravatar.com jduffield65 Avatar for reillytilbury from gravatar.com reillytilbury

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License: MIT License (MIT)

Author: Josh Duffield

Maintainer: Reilly Tilbury

Requires: Python >=3.8

Classifiers

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0.1.6

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