Plot features from DNA sequences (e.g. Genbank) with Python

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  • License Expression: MIT
    SPDX License Expression
  • Author: Zulko
  • Tags DNA, Sequence, Feature, Genbank, Biopython, Matplotlib
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Project description

DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files:

some figure

DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.

Infos

PIP installation:

pip install dna_features_viewer

Web documentation: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/

Github Page: https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer

Live demo: http://cuba.genomefoundry.org/plot-sequence-features

License: MIT

2016 Edinburgh Genome Foundry, University of Edinburgh

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Features Viewer is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

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