Skip to main content

A software tool for efficient filtering of Morpheus search engine results.

Project description

groupfilter - a software tool for efficient filtering of Morpheus search engine results

groupfilter is a module based on the pyteomics (http://pythonhosted.org/pyteomics/) package that increases the number of identifications above FDR threshold for Morpheus search engine results.

Dependencies

  • pyteomics (>= 3.0)

  • numpy

How to install

  • best way to install groupfilter is with pip: pip install numpy pyteomics groupfilter.

  • alternatively, you can download source code for each library and run python setup.py install for each of them.

  • There may be other ways to install numpy, depending on your platform.

How to use

groupfilter.py file1.tsv [file2.tsv ...] db.fasta

positional arguments:

files list of Morpheus PSM files

db.fasta path to FASTA file

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

groupfilter-0.2.tar.gz (3.5 kB view hashes)

Uploaded Source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page