Idtracker.ai tracks up to 100 unmarked animals from videos recorded in laboratory conditions using artificial intelligence. Free and open source.
Project description
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Idtracker.ai is a multi-animal tracking software for laboratory conditions. This work has been published in Nature Methods (pdf here)
Installation for developers.
On an environment with Python 3.10 or 3.11 and a working installation of Pytorch (Torch and Torchvision) you can install the latest published idtracker.ai version by installing directly form the GitLab repo:
pip install git+https://gitlab.com/polavieja_lab/idtrackerai
Or install the developing version from the develop branch (currently v5-dev):
pip install git+https://gitlab.com/polavieja_lab/idtrackerai@v5-dev
There exist two extra dependencies options:
devto install tools for formatting, static analysis, building, publishing, etc.docsto install needed packages to build documentation (sphinx and some plugins).
Contributors
- Jordi Torrents (2022-)
- Antonio Ortega (2021-2023)
- Francisco Romero-Ferrero (2015-2022)
- Mattia G. Bergomi (2015-2018)
- Ricardo Ribeiro (2018-2020)
- Francisco J.H. Heras (2015-2022)
All present files here are part of idtracker.ai, a project described in:
Romero-Ferrero, F., Bergomi, M.G., Hinz, R.C., Heras, F.J.H., de Polavieja, G.G., Nature Methods, 2019. idtracker.ai: tracking all individuals in small or large collectives of unmarked animals.
Copyright (C) 2017- Francisco Romero Ferrero, Mattia G. Bergomi, Francisco J.H. Heras, Robert Hinz, Gonzalo G. de Polavieja and the Champalimaud Foundation.
idtracker.ai is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. In addition, we require derivatives or applications to acknowledge the authors.
You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.
For more information please send an email (idtrackerai@gmail.com) or use the tools available at https://gitlab.com/polavieja_lab/idtrackerai.git.
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