Infomap network clustering algorithm
Project description
Infomap
Infomap is a network clustering algorithm based on the Map equation.
For detailed documentation, see mapequation.org/infomap.
For a list of recent changes, see CHANGELOG.md in the source directory.
Getting started
Infomap can be installed either from PyPI using pip or by compiling from source.
An experimental Javascript version for browsers is available on NPM.
Using pip
A pre-compiled version is available for macOS users.
Installing on other operating systems requires a working gcc or clang compiler.
To install, run:
pip install infomap
To upgrade, run:
pip install --upgrade infomap
When the Python package is installed, an executable called infomap (with lowercase i) is available from any directory.
To get started, read Infomap Python API.
Using Docker
There are currently two Docker images available on Docker Hub.
mapequation/infomap
mapequation/infomap:notebook based on jupyter/scipy-notebook
The image mapequation/infomap can be started with
docker run -it --rm \
-v `pwd`:/data \
mapequation/infomap
[infomap arguments]You can also use the supplied docker-compose.yml:
docker-compose run --rm infomapThe image mapequation/infomap:notebook can be started with
docker run \
-v `pwd`:/home/jovyan/work \
-p 8888:8888 \
mapequation/infomap:notebook \
start.sh jupyter labOr similarly, using docker-compose:
docker-compose up notebookCompiling from source
Installing Infomap from source requires a working gcc or clang compiler.
To download and compile the newest version from Github, clone the repository by running
git clone git@github.com:mapequation/infomap.git
cd infomap
makeThis creates the binary Infomap, run it using:
./Infomap [options] network_data destination
For a list of options, run:
./Infomap --help
Read the documentation to learn more about the different options.
Npm package
An experimental Javascript web worker is available on NPM.
To install it, run
npm install @mapequation/infomapFeedback
If you have any questions, suggestions or issues regarding the software, please add them to GitHub issues.
Terms of use
Infomap is released under a dual licence.
To give everyone maximum freedom to make use of Infomap and derivative works, we make the code open source under the GNU Affero General Public License version 3 or any later version (see LICENSE_AGPLv3.txt).
For a non-copyleft license, please contact us.
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Source Distribution
Built Distributions
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Hashes for infomap-2.7.1-cp310-cp310-macosx_11_0_x86_64.whl
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Hashes for infomap-2.7.1-cp39-cp39-win_amd64.whl
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Hashes for infomap-2.7.1-cp39-cp39-macosx_11_0_x86_64.whl
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| SHA256 | 37b91d20610c3ff089eef418a058635f805f1239e2fd8859cce22219059041b6 |
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Hashes for infomap-2.7.1-cp38-cp38-win_amd64.whl
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Hashes for infomap-2.7.1-cp38-cp38-macosx_10_15_x86_64.whl
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Hashes for infomap-2.7.1-cp37-cp37m-win_amd64.whl
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|---|---|---|
| SHA256 | 52aba7e9df564c8a05d5c48bf12626b892ac5e9e5fc519cbd100a8f705b4528e |
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Hashes for infomap-2.7.1-cp37-cp37m-macosx_10_15_x86_64.whl
| Algorithm | Hash digest | |
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