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PDE-G-CNN package for PyTorch

Project description

LieTorch

This project provides a python package that expands the functionality of the PyTorch framework with PDE-based group equivariant CNN operators [1].

The name

The name LieTorch is a reference to the Norwegian mathematician Sophus Lie, whose contributions to geometry are extensively used in this project. The name is pronounced /li:/ (as in Lee) and not /ˈlī/ (as in lie).

Installation

The recommended installation method is using conda. The following commands will install PyTorch and the lietorch package in a new environment.

  conda create -n <environment name>
  conda activate <environment name>

  # install PyTorch the usual way
  conda install pytorch torchvision torchaudio pytorch-cuda=11.8 -c pytorch -c nvidia

  # install LieTorch with conda
  conda install -c lietorch lietorch

  # or install with pip
  pip install lietorch

Neural network modules

Modules are grouped according to the manifold they operate on. Most modules have a functional equivalant in the lietorch.nn.functional namespace.

Euclidean Space ℝ²

Basic operators:

Module Functional C++/CUDA backend
MorphologicalConvolutionR2 morphological_convolution_r2
FractionalDilationR2 fractional_dilation_r2
FractionalErosionR2 fractional_erosion_r2
ConvectionR2 convection_r2
DiffusionR2 diffusion_r2
LinearR2 linear_r2

Position and Orientation Space 𝕄₂

Basic operators:

Module Functional C++/CUDA backend
LiftM2Cartesian lift_m2_cartesian -
ReflectionPadM2 reflection_pad_m2 -
ConvM2Cartesian conv_m2_cartesian -
MaxProjectM2 max_project_m2 -
AnisotropicDilatedProjectM2 anisotropic_dilated_project_m2
MorphologicalConvolutionM2 morphological_convolution_m2
LinearConvolutionM2 linear_convolution_m2
ConvectionM2 convection_m2
DiffusionM2 diffusion_m2
FractionalDilationM2 fractional_dilation_m2
FractionalErosionM2 fractional_erosion_m2
LinearM2 linear_m2

High-level modules for implementing PDE-based networks:

Module Description/PDE
ConvectionDilationPdeM2 $u_t=-\mathbf{c}u + \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}}$
ConvectionErosionPdeM2 $u_t=-\mathbf{c}u - \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}}$
CDEPdeLayerM2 $u_t=-\mathbf{c}u + \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}_1} - \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}_2}$
with batch normalization and linear combinations

Loss functions

Additional loss functions.

Module Functional Description
lietorch.nn.loss.DiceLoss lietorch.nn.functional.dice_loss Binary DICE loss

Generic

The modules in the generic category do not fit into any previous category and include operators that serve as C++/CUDA implementation examples.

Module Functional C++/CUDA backend
GrayscaleDilation2D grayscale_dilation_2d
GrayscaleErosion2D grayscale_erosion_2d

Dependencies

The current version of the lietorch python package has the following dependencies.

  • python 3.9+
  • pytorch 1.12+
  • torchvision 0.13+

The included experiments additionally depend on the following packages.

  • scikit-learn
  • tqdm
  • numpy
  • sty
  • mlflow
  • libtiff

Structure

  • /lietorch contains the main python package.
  • /experiments contains various experiments, including those used in publications.
  • /tests contains unit tests.
  • /backend contains the source code of the C++/CUDA backend,
  • /assets various files used in tests and documentation.

Cite

If you use this code in your own work please cite our paper:

[1] Smets, B.M.N., Portegies, J., Bekkers, E.J. et al. PDE-Based Group Equivariant Convolutional Neural Networks. J Math Imaging Vis (2022). https://doi.org/10.1007/s10851-022-01114-x

@article{smets2022pde,
  title={PDE-based Group Equivariant Convolutional Neural Networks},
  author={Smets, Bart and Portegies, Jim and Bekkers, Erik and Duits, Remco},
  journal={Journal of Mathematical Imaging and Vision},
  year={2022},
  doi={10.1007/s10851-022-01114-x},
  url={https://doi.org/10.1007/s10851-022-01114-x}
}

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lietorch-0.6.2.post1.tar.gz (61.1 MB view hashes)

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