Skip to main content

comprehensive neoepitope prediction software

Project description

neoepiscope is software for predicting neoepitopes from DNA sequencing (DNA-seq) data. Where most neoepitope prediction software confines attention to neoepitopes arising from at most one somatic mutation, often just an SNV, neoepiscope uses assembled haplotype output of HapCUT2 (Edge et al., 2017) to also enumerate neoepitopes arising from more than one somatic mutation. neoepiscope also takes into account frameshifting from indels and permits personalizing the reference transcriptome using germline variants.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

neoepiscope-0.7.0.tar.gz (26.1 MB view hashes)

Uploaded Source

Built Distribution

neoepiscope-0.7.0-py3-none-any.whl (25.9 MB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page