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Python package for Next Generation Sequencing fragment manipulation

Project description

Next Generation Sequencing fragment manipulation

Build Status PyPI version

This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install NGSfragments

Usage

from NGSfragments import fragments
import numpy as np

# Create data
frags = fragments("test_bam.bam", verbose=True)

Download files

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Source Distribution

ngsfragments-2.1.1.tar.gz (6.6 MB view hashes)

Uploaded Source

Built Distribution

ngsfragments-2.1.1-cp311-cp311-macosx_14_0_x86_64.whl (2.4 MB view hashes)

Uploaded CPython 3.11 macOS 14.0+ x86-64

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