Skip to main content

National Phenome Centre toolbox

Project description

	Toolbox for preprocessing of metabolic profiling datasets
	---------------------------------------------------------

	.. image:: https://travis-ci.org/phenomecentre/nPYc-Toolbox.svg?branch=master
	   :target: https://travis-ci.org/phenomecentre/nPYc-Toolbox
	   :alt: Travis CI build status

	.. image:: https://readthedocs.org/projects/npyc-toolbox/badge/?version=latest
	   :target: http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest
	   :alt: Documentation Status

	.. image:: https://codecov.io/gh/phenomecentre/nPYc-Toolbox/branch/master/graph/badge.svg
	   :target: https://codecov.io/gh/phenomecentre/nPYc-Toolbox
	   :alt: Test coverage

	|

	The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.

	Documentation can be found on `Read the Docs <http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest>`_.

	Imports
	 - Peak-picked LC-MS data (XCMS, Progenesis QI, *&* Metaboscape)
	 - Raw NMR spectra (Bruker format)
	 - Targeted datasets (TargetLynx, Bruker BI-LISA, *&* BI-Quant-Ur)

	Provides
	 - Batch *&* drift correction for LC-MS datasets
	 - Feature filtering by RSD *&* linearity of response
	 - Calculation of spectral line-width in NMR
	 - PCA of datasets
	 - Visualisation of datasets

	Exports
	 - Basic tabular csv
	 - `ISA-TAB <http://isa-tools.org>`_

	The nPYc toolbox is `developed <https://github.com/phenomecentre/npyc-toolbox>`_ by the informatics team at `The National Phenome Centre <http://phenomecentre.org/>`_ at `Imperial College London <http://imperial.ac.uk/>`_.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nPYc-1.2.8.tar.gz (301.5 kB view hashes)

Uploaded Source

Built Distribution

nPYc-1.2.8-py3-none-any.whl (360.0 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page