Single Cell Marker Gene Selection Tool For Spatial Trancriptomics
Project description
scMAGS: Marker Gene Selection From scRNA-seq Data for Spatial Transcriptomics Studies
-> scmags selects marker genes from scRNA-seq data that are exclusive to each cell type such that, selected marker genes are highly expressed in a specific cell type while lowly expressed in other cell types.
Installation
-> scmags can be installed as follows:
$ pip install scmags
-> You can also install the development version of scmags from master branch of Git repository:
$ pip install git+https://github.com/doganlab/scmags
-> See tutorial for more detailed information.
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