Operations on SSSOM mapping tables
Project description
Python Utilities for SSSOM
SSSOM (Simple Standard for Sharing Ontology Mappings) is a TSV and RDF/OWL standard for ontology mappings
WARNING:
The export formats (json, rdf) of sssom-py are not yet finalised!
Please expect changes in future releases!
See https://github.com/OBOFoundry/SSSOM
This is a python library and command line toolkit for working with SSSOM. It also defines a schema for SSSOM.
Documentation
See documentation
Deploy documentation
make sphinx
make deploy-docs
Schema
See the schema/ folder for source schema in YAML, plus derivations to JSON-Schema, ShEx, etc.
Testing
tox is similar to make, but specific for Python software projects. Its
configuration is stored in tox.ini in different "environments"
whose headers look like [testenv:...]. All tests can be run with:
$ pip install tox
$ tox
A specific environment can be run using the -e flag, such as tox -e lint to run
the linting environment.
Outstanding Contributors
Outstanding contributors are groups and institutions that have helped with organising the SSSOM Python package's development, providing funding, advice and infrastructure. We are very grateful for all your contribution - the project would not exist without you!
Harvard Medical School
The INDRA Lab, a part of the Laboratory of Systems Pharmacology and the Harvard Program in Therapeutic Science (HiTS), is interested in natural language processing and large-scale knowledge assembly. Their work on SSSOM is funded by the DARPA Young Faculty Award W911NF2010255 (PI: Benjamin M. Gyori).
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