skip to navigation
skip to content

Not Logged In

Colonyzer2 1.0.77

Image analysis for microbial cultures growing on solid agar surfaces

Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.

There are also a set of console scripts available for specific analysis jobs. For example, after installation, executing:

timecourse

on the commandline, will run a script to analyse a batch of timecourse images of microbial colonies growing up over time. Detailed documentation can be found at the website below:

Website describing current, stable release.

Open access manuscript describing Colonyzer algorithms:

Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow

 
File Type Py Version Uploaded on Size
Colonyzer2-1.0.77.zip (md5) Source 2014-03-25 42KB
  • Downloads (All Versions):
  • 299 downloads in the last day
  • 765 downloads in the last week
  • 4023 downloads in the last month