skip to navigation
skip to content

Not Logged In

MetaChecka2000 0.1.3

MetaChecka2000

.
. 888b d888 .d8888b. .d8888b. 888 d8P
. 8888b d8888 d88P Y88b d88P Y88b 888 d8P
. 88888b.d88888 888 888 888 888 d8P
. 888Y88888P888 888 .d88P 888d88K
. 888 Y888P 888 888 .od888P" 8888888b
. 888 Y8P 888 888 888 d88P" 888 Y88b
. 888 " 888 Y88b d88P 888" 888 Y88b
. 888 888 "Y8888P" 888888888 888 Y88b
.

Overview
=========

MetaChecka is a metagenomic QA toolset. It uses sets of reference
genes to test for bin completeness and contamination

Installation
=========

Should be as simple as

pip install MetaChecka2000

Data preparation and running MetaChecka2000
=========

MetaChecka2000 expects to see a folder containing one or more multiple fasta
files containg assembled and binned contigs, one file for each bin.

You need to:

1. Extract genes from the contigs
2. Use hmmer to match these genes to an existing database
3. Do some counting

Use: metachecka2000 -h for more detailed help

Licence and referencing
=========

Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000

This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.

Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.  
File Type Py Version Uploaded on Size
MetaChecka2000-0.1.3.tar.gz (md5) Source 2012-12-18 21KB
  • Downloads (All Versions):
  • 4 downloads in the last day
  • 62 downloads in the last week
  • 266 downloads in the last month