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PBS-utils 1.0

Utility scripts to run arbitrary bioinformatics software on a PBS server

Latest Version: 1.1

Utility scripts to run arbitrary bioinformatics software on a PBS server. Currently only serial jobs (i.e. jobs that run on a single node exclusively) are supported. Two _run scripts are provided: garli_run and mb_run for GARLI (OpenMP version) and MrBayes (MPI version) respectively.

The framework allows to wrap any programm (MPI or multithreaded) in analogious script very easily. If you write such a script, I would be thankfull for allowing me to include it to this package as well.

All suggestions and bug reports are welcome at project's homepage at Launchpad.

Note: 1) the scripts should be installed on the main server; 2) it is necessary that all PBS computing nodes are configured to create per-job temporary directory and export it's path as TMPDIR environment variable.

 
File Type Py Version Uploaded on Size
PBS-utils-1.0.tar.gz (md5) Source 2013-12-07 5KB
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