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ProDy 1.5.1

A Python Package for Protein Dynamics Analysis


ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. ProDy also comes with several analysis applications and a graphical user interface for visual analysis.


You can run ProDy on all major platforms. For download and installation instructions see:


ProDy is available under MIT License. See LICENSE.txt for more details.

Biopython ( KDTree and pairwise2 modules are distributed with ProDy. Biopython is developed by The Biopython Consortium and is available under the Biopython license (

Pyparsing ( module is distributed with ProDy. Pyparsing is developed by Paul T. McGuire and is available under the MIT license (

Argparse module ( is distributed with ProDy. Argparse is developed by Steven J. Bethard and is available under the Python Software Foundation License.

File Type Py Version Uploaded on Size
ProDy-1.5.1.tar.gz (md5) Source 2013-12-24 840KB
ProDy-1.5.1.win32-py2.6.exe (md5) MS Windows installer 2.6 2013-12-24 1MB
ProDy-1.5.1.win32-py2.7.exe (md5) MS Windows installer 2.7 2013-12-24 1MB
ProDy-1.5.1.win32-py3.2.exe (md5) MS Windows installer 3.2 2013-12-24 1MB
ProDy-1.5.1.win32-py3.3.exe (md5) MS Windows installer 3.3 2013-12-24 1MB (md5) Source 2013-12-24 924KB
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