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RUST 0.1.1

Ribo-Seq Unit Step Transformation

This tool is designed for ribo-seq data and produces a metafootprint profile that reveals the influence of mRNA features such as codons/amino acids on the relative read density in the sample across the entire ribosome and nascent peptide region. The Kullback-Leibler divergence across these sites is also provided.

An online version is available on RiboGalaxy.

Author: Patrick O’Connor

Citation

Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.

Patrick O’Connor, Dmitry Andreev, Pavel Baranov

bioRxiv doi: http://dx.doi.org/10.1101/018762

 
File Type Py Version Uploaded on Size
RUST-0.1.1-py2-none-any.whl (md5) Python Wheel py2 2015-10-20 29KB
RUST-0.1.1.tar.gz (md5) Source 2015-10-20 13KB