CWL generator for ACD files
Project description
acd2cwl provides: - a2c-tools, a generator of wrappers for EMBOSS tools. It uses the formal definition of the tools provided by the ACD files. - a2c-tests, a generator of functional tests for these tools. It uses the functional tests defined in the EMBOSS package itself
Install
Installing the official package from PyPi:
pip install acd2cwl
Or from source: ` git clone https://github.com/hmenager/acd2cwl.git cd acd2cwl && python setup.py install `
Run tool wrappers generator
Simple command:
a2c-tools /usr/share/EMBOSS/acd/*.acd
For more options, just type
a2c-tools –help
Run test jobs generator
Simple command:
a2c-tests /usr/share/EMBOSS/test/qatest.dat /usr/share/EMBOSS/acd/*.acd
For more options, just type
a2c-tests –help
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