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caspo 1.7

Reasoning on the response of logical signaling networks with Answer Set Programming

Package Documentation

Latest Version: 3.0.0.post2

For more information, contact details and bibliography, please visit caspo’s website.

1.7 (2014-02-03)

  • Adds –no-feedback option

1.6 (2014-01-27)

  • Use a single input file for intervention scenarios

1.5 (2014-01-19)

  • Accept PKN with loops (cut the loops in the search)

  • Adds verbosity levels for GTTs
    • Compute GTTs (–gtts 1)
    • Write GTTs representatives and core predictions (–gtts 2)
    • Write each GTT and basic stats (–gtts 3)
  • Adds –truncate command line option to select the truncation function

  • Adds –max-and command line option to limit AND gates’ size

  • Adds a random model generator for benchmarking

  • Implements minimal intervention strategies

  • Rename previous to and creates

1.4 (2013-06-10)

  • Use jumpy configuration by default for clasp
  • Adds –clasp command line option to use custom clasp’s parameters

1.3 (2013-03-08)

  • OO refactoring
  • Replace deprecated optparse with argparse
  • Remove short options
  • Implements k-fold cross validation
  • Adds size tolerance as an option
  • Sphinx docs

1.2 (2013-02-05)

  • Depends on PyASP instead of BioASP
  • Package the full ASP encoding
  • Implements old BioASP’s functionality
  • Upgrade dependency on cellnopt.wrapper to 1.0.5

1.1 (2012-12-20)

  • Removes CellNOpt installation relying on cellnopt.wrapper

1.0 (2012-12-03)

  • Initial release
File Type Py Version Uploaded on Size
caspo-1.7.tar.gz (md5) Source 2014-02-03 32KB