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clinical-research-study-manager 1.2.3.dev1

Program to manage some common clinical research tasks from the command line

Latest Version: 1.2.8.dev1

Program to manage some common clinical research task from the command line

Getting Started

This program requires python 3 and a few external packages.

Prerequisites

Requires python and above

$ python 3.5


$ pip install openpyxl
$ pip install pandas
$ pip install numpy
$ pip install matplotlib

Installing

$ pip install clinical_research_study_manager

Get Help

$ clinical_research_study_manager -h
optional arguments:
  -h, --help            show this help message and exit
  -create_project Project_Name
                        Creates a new project titled Project_Name in the
                        Projects directory
  -load_project Project_Name
                        Loads Project Project_Name from the Projects directory
                        for study activities
  -list_projects        List available projects to load

Create New Project

$ clinical_reseaerch_study_manager -create_project Testing
Creating new project titled Testing
Created patient_data[phi] for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
Created patient_data[de_identified] for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
Created logs for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
Created logs/logs_with_phi for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
Created data_visualization for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
Created log files for project Testing
Created Screening_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Screening_Log.xlsx
Created Master_Linking_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/logs_with_phi/Master_Linking_Log.xlsx
Created Follow_Up_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Follow_Up_Log.xlsx
Created Enrollment_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Enrollment_Log.xl

Load Specific Project

$ clinical_research_study_manager -load_project Testing
Opening Testing
1. Manage Logs
2. Query Logs
Please choose what actions you would like to take, q to quit.

List Available Projects

$ clinical_research_study_manager -list_projects
Current Projects are:
1 : Testing

Running the tests

Coming Soon

Break down into end to end tests

Explain what these tests test and why

Coming Soon

And coding style tests

Coming Soon

Coming Soon

Authors

Seth Pitts

License

This project is licensed under the MIT License - see the LICENSE.txt file for details

 
File Type Py Version Uploaded on Size
clinical_research_study_manager-1.2.3.dev1.tar.gz (md5) Source 2017-11-11 15KB