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csample 0.6.2

Sampling library for Python

csample: Sampling library for Python

csample provides pseudo-random sampling methods applicable when the size of population is unknown:

  • Use hash-based sampling to fix sampling rate
  • Use reservoir sampling to fix sample size

Hash-based sampling

Hash-based sampling is a filtering method that tries to approximate random sampling by using a hash function as a selection criterion.

Following list describes some features of the method:

  • Since there are no randomness involved at all, the same data set with the same sampling rate (and also with the same salt value) always yields exactly the same result.
  • The size of population doesn’t need to be specified beforehand. It means that the sampling process can be applied to data stream with unknown size such as system logs.

Here are some real and hypothetical applications:

  • [RFC5475] Sampling and Filtering Techniques for IP Packet Selection is a well-known application.
  • Online streaming algorithm to select 10% of users for A/B testing. “Consistent” nature of the algorithm guarantees that any user ID selected once will always be selected again. There’s no need to maintain a list of selected user IDs.

csample provides two sampling functions for a convenience.

sample_line() accepts iterable type containing strs:

data = [
    'alan',
    'brad',
    'cate',
    'david',
]
samples = csample.sample_line(data, 0.5)

sample_tuple() expects tuples instead of strs as a content of iterable. The third argument 0 indicates a column index:

data = [
    ('alan', 10, 5),
    ('brad', 53, 7),
    ('cate', 12, 6),
    ('david', 26, 5),
]
samples = csample.sample_tuple(data, 0.5, 0)

In both cases, the function returns immediately with sampled iterable.

Reservoir sampling

Reservoir sampling is a family of randomized algorithms for randomly choosing a sample of k items from a list S containing n items, where n is either a very large or unknown number.

You can specify random seed to perform reproducible sampling.

For more information, read Wikipedia

csample provides single function for reservoir sampling:

data = [
    'alan',
    'brad',
    'cate',
    'david',
]
samples = csample.reservoir(data, 2)

Resulting samples contains two elements randomly choosen from given data.

Note that the function doesn’t return a generator but list, and also won’t finish until it consume the entire input stream.

Also note that, by default, reservoir sampling doesn’t preserve order of original list which means that following assertion holds in general:

population = [0, 1, 2, 3, 4, 5]
samples = csample.reservoir(population, 3)
assert sorted(samples) != samples

To maintain original order, provide keep_order=True parameter:

population = [0, 1, 2, 3, 4, 5]
samples = csample.reservoir(population, 3, keep_order=True)
assert sorted(samples) == samples

API documentation

Read the full API documentation.

Command-line interface

csample also provides command-line interface.

Following command prints 50% sample from 100 integers:

> seq 100 | csample -r 0.5

To see more options use --help command-line argument:

> csample --help

Hash functions

In order to obtain fairly random/unbiased sample, it is critical to use suitable hash function.

There could be many criteria such as avalanche effect. For those who are interested, see link below:

Hash-based sampling implemented in csample currently supports xxhash and spooky.

Installation

Installing csample is easy:

pip install csample

or download the source and run:

python setup.py install
 
File Type Py Version Uploaded on Size
csample-0.6.2.tar.gz (md5) Source 2015-10-23 6KB