dicom-wsi

Package for converting whole slide image files to dicom.

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Development Status
- 3 - Alpha
Intended Audience
- Developers
License
- OSI Approved :: MIT License
Programming Language
Topic
- Software Development :: Build Tools

Project description

dicom_wsi

Package for converting whole slide image files to DICOM.

Free software: MIT license
Documentation: https://dicom-wsi.readthedocs.io.

Usage

First, you need to install dicom_wsi and its dependencies. See this link for details.

To use dicom-wsi:

python dicom_wsi.cli.py -w <WSI File path> -o <OutputDirectory> -p <output file prefix> -y yaml/base.yaml

That’s it! Most of the time you wan’t need to change anything. But if you do, please see the example yaml file.

Features

Validate DICOM elements using pydicom
Output format DICOM formatted files (vetted with dciodvfy)

TODO

Find out how to determine what FileMetaInformationGroupLength should be

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

1.0.4 (2023-10-27)

Decreased dependencies for install
Added tryCatch for Aperio data without expected metadata

0.1.0 (2021-1-22)

First release on PyPI.

Project details

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Development Status
- 3 - Alpha
Intended Audience
- Developers
License
- OSI Approved :: MIT License
Programming Language
Topic
- Software Development :: Build Tools

Release history Release notifications | RSS feed

This version

1.0.4

Oct 27, 2023

1.0.3

Feb 12, 2021

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Uploaded Oct 27, 2023 Python 3

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