NetworkX for genotype-phenotype maps.
Project description
# GPGraph
**Genotype-phenotype maps in NetworkX**
Port a `GenotypePhenotypeMap` to a [NetworkX Digraph](https://networkx.github.io/).
## Basic Example
GPGraph follows NetworkX syntax. Initialize a graph, add the
genotype-phenotype map object, and draw the graph. This library even
comes with a draw method, `draw_flattened`, suited for genotype-phenotype maps.
```python
from gpmap.simulate import MountFujiSimulation
from gpgraph import GenotypePhenotypeGraph, draw_flattened
# Simulate a genotype-phenotype map
sim = MountFujiSimulation.from_length(4)
sim.set_roughness((-1,1))
# Turn the genotype-phenotype map into a networkx object
G = GenotypePhenotypeGraph()
G.add_gpm(gpm)
# Draw the graph
draw_flattened(G, with_labels=False, node_size=100)
```
<img src="docs/_img/readme-fig.png" width="350">
## Install
Clone this repo and install with `pip`:
```
pip install -e .
```
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
gpgraph-0.1.0.tar.gz
(5.2 kB
view hashes)