Utilities for Informatics Matters Pipelines
Project description
The im-pipelines-utils module is a core set of utilities employed by Informatics Matters’ computational pipelines, its automated Pipeline Tester and distributed in a number of our container images.
pipelines_utils
A generally useful collection of utility modules for any Informatics Matters’ pipelines. These consist of utilities in the parameter_utils module to process multi-value (comma-separated) command-line parameter values along with numerous helper and convenience methods in utils for file handling and logging.
utils depends on the RDKit open source cheminformatics software, which you will need to install separately if you need to use this module.
rdkit_utils
A package of utility modules providing convenient wrappers around the corresponding rdkit distribution.
rdkit_utils depends on the RDKit open source cheminformatics software, which you will need to install separately if you need to use this module.
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