Run Jupyter on Orchestra 2
Project description
Jupyter-O2 is a command-line tool that automatically connects to and runs Jupyter on Orchestra 2, an HPC cluster managed by the HMS Resesarch Computing group.
Installation
First, follow the O2 wiki’s procedure to set up Jupyter for your account on O2.
Next, install Jupyter-O2.:
$ pip install jupyter-o2
Then, find the jupyter-o2.cfg file in etc/jupyter-o2, where etc is located either in the environment root or the system-wide /etc directory. Edit this file according to its instructions, particularly MODULE_LOAD_CALL and SOURCE_JUPYTER_CALL.
Note: jupyter-o2.cfg` should be installed upon setup. If not, you may also copy jupyter_o2/jupyter-o2.cfg into your home folder as .jupyter-o2.cfg.
Usage
$ jupyter_o2 <USER> <subcommand>
- Example: jupyter_o2 js123 notebook
This will launch an X11-enabled ssh, start an interactive node running jupyter notebook, ssh into that interactive node to allow requests to be forwarded, and finally open the notebook in your browser.
Requirements and compatibility
python 2.7 or 3.6 (tested)
Pexpect
POSIX: Jupyter-O2 has been tested on MacOS. It may work on Linux and it would likely require both Cygwin and a Cygwin version of Python to work on Windows (for Pexpect and SSH).
Optional installs
pinentry (a command line tool)
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Source Distribution
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