libnano 0.2.3.0

Features

• seqstr: Reverse Complement and Hamming Distance finders

• seqgraph: find cliques of compatible sequences

• seqint: convert sequences less than 32 bases to binary

• seqscreen: filter sequences based on things like GC content

• ensemblrest: Use the Ensembl REST API to look up gene and transcript information

• prostr: work with converting DNA to RNA to AA and back again

• barcode_tools: generate DNA barcode sets with length and Hamming distance restrictions

• seqsearch: search sequences for features like restriction sites or “submers” (kmers with 0 or more mismatches to a subsequence in the target)

• fileio: genbank and fasta reader/writers, xmfa

• seqrecord: less featured replacement for Biopython SeqRecord

Installation

If you would like to install libnano in your local Python environment you may use pip:

$ pip install libnano

or build from source from Github repo

$ python setup.py install