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limix 0.5.3

A flexible and fast mixed model toolbox written in C++/python

Latest Version: 0.6.6

LIMIX

What is Limix?

Limix is a flexible and efficient linear mixed model library with interfaces to Python and other scripting languages.

Authors:

Oliver Stegle (stegle@ebi.ac.uk) Christoph Lippert (lippert@microsoft.com) Franceso Paolo Casale (casale@ebi.ac.uk)

Installation:

Recommended is an installation via pypi.

pip install limix will work on most systems.

If you want to install LIMIX from source you require: Python: - socns, scipy, numpy

Swig: - swig 2.0 or higher

How to use LIMIX? A good starting point is our package Vignettes. These tutorials are freely available in this repository: https://github.com/PMBio/limix-tutorials.

The main package vignette can also be viewed using the ipython notebook viewer: http://nbviewer.ipython.org/github/pmbio/limix-tutorials/blob/master/demo_yeast.ipynb

 
File Type Py Version Uploaded on Size
limix-0.5.3.tar.gz (md5) Source 2014-05-09 5MB
  • Downloads (All Versions):
  • 61 downloads in the last day
  • 306 downloads in the last week
  • 1343 downloads in the last month
  • Author: Christoph Lippert, Paolo Casale, Oliver Stegle
  • Home Page: http://
  • Keywords: linear mixed models,GWAS,QTL
  • License: BSD
  • Requires scons, h5py, pylab, numpy, scipy
  • Package Index Owner: oliver.stegle
  • DOAP record: limix-0.5.3.xml