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limix 0.5.6

A flexible and fast mixed model toolbox written in C++/python

Latest Version: 1.0.17


## What is LIMIX?

LIMIX is a flexible and efficient linear mixed model library with interfaces to Python and other scripting languages.

By Christoph Lippert (,
Franceso Paolo Casale (, and Oliver Stegle (

## Philosophy

Genomic analyses require flexible models that can be adapted to the needs of the user.
LIMIX is smart about how particular models are fit to safe computational cost.

## Installation:

* Recommended is an installation via pypi.
* pip install limix will work on most systems.

* If you want to install LIMIX from source you require:
- scons, scipy, numpy

* Swig:
- swig 2.0 or higher

## How to use LIMIX?
A good starting point is our package Vignettes. These tutorials can are available in this repository:

The main package vignette can also be viewed using the ipython notebook viewer: or by downloading the PDF equivalent:

More extensive documentation will be available soon.

## Problems ?
If you want to use LIMIX and encounter any issues, please contact us by email:

## License
File Type Py Version Uploaded on Size
limix-0.5.6.tar.gz (md5) Source 2014-07-19 4MB
  • Author: Christoph Lippert, Paolo Casale, Oliver Stegle
  • Keywords: linear mixed models,GWAS,QTL
  • License: BSD
  • Requires scipy, numpy, matplotlib, pandas, scons
  • Package Index Owner: oliver.stegle
  • Package Index Maintainer: dhorta
  • DOAP record: limix-0.5.6.xml