Metabolic Network Completion. Compute minimal completions to your draft net with reactions from a repair net.
Project description
Installation
You can install meneco by running:
$ pip install --user meneco
On Linux the executable script can then be found in ~/.local/bin
and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/3.2/bin.
Usage
Typical usage is:
$ meneco.py draftnetwork.sbml repairnetwork.sbml seeds.sbml targets.sbml
For more options you can ask for help as follows:
$ meneco.py --h
usage: meneco.py [-h] [--enumerate] draftnetwork repairnetwork seeds targets
positional arguments:
draftnetwork metabolic network in SBML format
repairnetwork metabolic network in SBML format
seeds seeds in SBML format
targets targets in SBML format
optional arguments:
-h, --help show this help message and exit
--enumerate enumerate all minimal completions
Samples
Sample files for the reconstruction of ectocarpus are available here: ectocyc.sbml, metacyc_16-5.sbml, seeds.sbml, targets.sbml
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
meneco-1.4.3.1.tar.gz
(8.0 kB
view hashes)
