Toolset for analyzingmetatranscriptome data mapped onto metagenomic data
Project description
Purpose
metameta is a toolset for analyzing metatranscriptome data that has been mapped to metagenomic data.
Requirements
Python 3.4 or higher
pysam 0.8.2.1 or higher
Installation
‘’pip install metameta’’
Usage
metameta <tool name> [arguments for tool]
“metameta” without arguments will give help on the metameta package. “metameta <tool>” without any arguments will give the help for that tool.
Tools
generate_fastr.py [–log_file] [–verbose] [–version] [–verify] <fastaq> <bsam> <fastr>
filter_fastr.py [–log_file] [–verbose] [–version] [–verify] [–min_length] [–max_length] <fastr>
annotate_clusters.py [–log_file] [–verbose] [–version] [–verify] <stats> <gff>
annotate_clusters.py [–log_file] [–verbose] [–version] [–verify] <table> <gff> <[ann]>
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