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multifastadb 0.0.1

present a collection of indexed fasta files as a single source

Latest Version: 0.2.10

MultiFastaDB opens a set of indexed fasta files and provides ordered lookup of a given accession across all of them. The intent is to simplify accessing a virtual database of sequences that is distributed across multiple files.

>> from multifastafile import MultiFastaDB >> mfdb = MultiFastaDB([‘/a/file.fasta’, ‘/a/dir/of/fastas/’]) >> mfdb.fetch(‘NM_01234.5’, 60, 70) >> mfdb[‘NM_01234.5’][60:70] # (equivalent to the above) >> mfdb.where_is(‘NM_01234.5’)

File Type Py Version Uploaded on Size
multifastadb-0.0.1-py2.7.egg (md5) Python Egg 2.7 2014-09-01 1KB
multifastadb-0.0.1.tar.gz (md5) Source 2014-09-01 373KB