A few simple math function for other Oxford Nanopore processing scripts
Project description
This module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data
FUNCTIONS
Calculate read N50 from a set of lengths getN50(readlenghts)
Remove extreme length outliers from a dataset removeLengthOutliers(dataframe, columname)
Calculate the average Phred quality of a read aveQual(qualscores)
Write out the statistics report after calling readstats function writeStats(dataframe, outputname)
Compute a number of statistics, return a dictionary readstats(dataframe)
INSTALLATION
pip install nanomathor
conda install -c bioconda nanomath
STATUS
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