A Python plugin for OMERO.web

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Project description

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OMERO.iviewer

An OMERO.web app for visualizing images in OMERO.

Requirements

  • OMERO 5.6.0 or newer.

Installing from PyPI

This section assumes that an OMERO.web is already installed.

Install the app using pip:

NB: You need to ensure that you are running pip from the python environment where omero-web is installed. Depending on your install, you may need to call pip with, for example: /path/to/venv/bin/pip install ...

$ pip install -U omero-iviewer

Add iviewer custom app to your installed web apps:

$ omero config append omero.web.apps '"omero_iviewer"'

To replace the default omero.web viewer:

$ omero config set omero.web.viewer.view omero_iviewer.views.index

To enable the “open with” feature:

$ omero config append omero.web.open_with '["omero_iviewer", "omero_iviewer_index",
  {"supported_objects":["images", "dataset", "well"],
   "script_url": "omero_iviewer/openwith.js", "label": "OMERO.iviewer"}]'

Now restart OMERO.web as normal.

Usage

A guide to using OMERO.iviewer can be found on https://omero-guides.readthedocs.io/en/latest/iviewer/docs/iviewer.html

License

OMERO.iviewer is released under the AGPL.

Supported by

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