Tools for plotting Oxford Nanopore and other long-read data.
Project description
- ‘pauvre’ is a package for plotting Oxford Nanopore and other long read data.
The name means ‘poor’ in French, a play on words to the oft-used ‘pore’ prefix for similar packages. The current implementation of this package does the following things:
marginplot - Makes marginal density plots for FASTQ files with Q scores.
stats - Prints out helpful stats about your fastq file and a data table.
synplot - Makes a synteny plot from gff files and protein alignments.
redwood - makes a “genome browser” plot for circular genomes, like mitochondria.
This package was designed for python 3, but it might work in python 2. You can visit the gitub page for more detailed information here: https://github.com/conchoecia/pauvre
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
