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My personal functions and utilities for Python programming.

Project description

prestools

https://img.shields.io/pypi/v/prestools.svg https://img.shields.io/travis/robertopreste/prestools.svg Documentation Status Python 3 https://img.shields.io/badge/Say%20Thanks-!-1EAEDB.svg

My personal functions and utilities for Python programming.

Features

Several ready-to-use functions for different tasks:

  • bioinformatics (prestools.bioinf)

  • data clustering (prestools.clustering)

  • plotting (prestools.graph)

  • miscellaneous (prestools.misc)

Please refer to the Usage section of the documentation for further details.

Installation

Install prestools using pip (Python 3 only):

pip install prestools

Please refer to the Installation section of the documentation for further details.

Credits

This package was created with Cookiecutter and the cc-pypackage project template.

History

0.1.0 (2019-03-07)

  • First development release.

0.1.1 (2019-03-14)

  • Add functions for clustering data.

0.1.2 (2019-03-15)

  • Add hamming_distance() and mutate_sequence() functions in prestools.bioinf and related tests;

  • Clean code style.

0.1.3 (2019-03-19)

  • Add command line interface commands and related tests for bioinf and misc modules;

  • Add filter_type() function in prestools.misc and related tests;

  • Clean code style.

0.1.4 (2019-03-23)

  • Add wordcount() function in prestools.misc and related tests.

0.1.5 (2019-04-05)

  • Add equal_files() function in prestools.misc and related tests;

  • Update docstrings.

0.1.6 (2019-04-11)

  • Add random_image() function and CLI in prestools.plotting.

0.1.7 (2019-04-20)

  • Add benchmark() function in prestools.misc and related tests.

0.1.8 (2019-04-26)

  • Change pm.benchmark() function to a decorator;

  • Add several distance calculation functions to prestools.bioinf and related tests;

  • Reformat code in prestools.bioinf.

0.1.9 (2019-04-27)

  • Add distance functions to bioinf CLI command and related tests.

0.1.10 (2019-05-06)

  • Change plotting library name to graph (to avoid alias conflict with pandas_profiling).

0.1.11 (2019-05-07)

  • Fix docstrings and type hints;

  • Update documentation.

0.1.12 (2019-05-08)

  • Add apply_parallel function to prestools.misc.

0.1.13 (2019-06-22)

  • Add short version arguments to reverse_complement bioinf function.

0.1.14 (2019-07-03)

  • Add learn module and related tests;

  • Remove random_image from graph module;

  • Clean code.

0.2.0 (2019-08-14)

  • Add rpkm and quantile_norm functions to prestools.bioinf;

  • Add reduce_xaxis_ticks and reduce_yaxis_ticks functions to prestools.graph;

  • Move flatten_image to prestools.graph;

  • Remove prestools.learn;

  • Update related tests;

  • Fix documentation and API.

0.2.1 (2019-09-07)

  • Add plot_confusion_matrix to prestools.graph;

  • Add related tests;

  • Drop support for Python < 3.6;

  • Update requirements;

  • Update documentation.

Project details


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