Simple FITS files I/O package
Project description
============================================
pycfitsio: Python ctypes wrapper for cfitsio
============================================
Features
========
* read binary tables using hdu and column names into simple dictionaries of arrays
* write FITS files incrementally 1 HDU at a time
Requirements
============
pycfitsio requires the dynamic library cfitsio, in linux it usually packaged as libcfitsio-dev
Install
=======
pip install pycfitsio #stable version
# for development version clone from github and run
python setup.py install
Examples
=======
Reading
_______
>>> f = pycfitsio.open("debug/data.fits")
>>> hdulist = f.HDUs
>>> print(hdulist)
OrderedDict([('DATA', HDU: DATA)])
>>> hdu = f['DATA']
>>> column_array = f['DATA'].read_column('signal')
>>> all_columns = f['DATA'].read_all()
>>> print(all_columns)
OrderedDict([('signal', array([ 0., 1. ....])), 'flag', array([1, 1, ....])])
Writing
_______
>>> from collections import OrderedDict
>>> f = pycfitsio.create('file.fits')
3 options to write HDUs:
#. list of (name, array) tuples
>>> f.write_HDU('HDUNAME',
[('firstcolname', np.arange(10)), ('seccolname', np.arange(10)**2)]
)
#. OrderedDict keys = name values = array
>>> data = OrderedDict()
>>> data['firstcolname'] = np.arange(10)
>>> data['seccolname'] = np.arange(10)**2
>>> f.write_HDU('HDUNAME', data)
#. Compound numpy array
>>> data = np.ones(10, dtype = [('firstcolname', np.long), ('seccolname', np.double)])
>>> f.write_HDU('HDUNAME', data)
>>> f.close()
pycfitsio: Python ctypes wrapper for cfitsio
============================================
Features
========
* read binary tables using hdu and column names into simple dictionaries of arrays
* write FITS files incrementally 1 HDU at a time
Requirements
============
pycfitsio requires the dynamic library cfitsio, in linux it usually packaged as libcfitsio-dev
Install
=======
pip install pycfitsio #stable version
# for development version clone from github and run
python setup.py install
Examples
=======
Reading
_______
>>> f = pycfitsio.open("debug/data.fits")
>>> hdulist = f.HDUs
>>> print(hdulist)
OrderedDict([('DATA', HDU: DATA)])
>>> hdu = f['DATA']
>>> column_array = f['DATA'].read_column('signal')
>>> all_columns = f['DATA'].read_all()
>>> print(all_columns)
OrderedDict([('signal', array([ 0., 1. ....])), 'flag', array([1, 1, ....])])
Writing
_______
>>> from collections import OrderedDict
>>> f = pycfitsio.create('file.fits')
3 options to write HDUs:
#. list of (name, array) tuples
>>> f.write_HDU('HDUNAME',
[('firstcolname', np.arange(10)), ('seccolname', np.arange(10)**2)]
)
#. OrderedDict keys = name values = array
>>> data = OrderedDict()
>>> data['firstcolname'] = np.arange(10)
>>> data['seccolname'] = np.arange(10)**2
>>> f.write_HDU('HDUNAME', data)
#. Compound numpy array
>>> data = np.ones(10, dtype = [('firstcolname', np.long), ('seccolname', np.double)])
>>> f.write_HDU('HDUNAME', data)
>>> f.close()