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pysam 0.14

pysam

pysam - a python module for reading, manipulating and writing genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.

The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.

See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable

 
File Type Py Version Uploaded on Size
pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (md5) Python Wheel cp27 2018-02-09 8MB
pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (md5) Python Wheel cp27 2018-02-09 8MB
pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (md5) Python Wheel cp34 2018-02-09 9MB
pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (md5) Python Wheel cp35 2018-02-09 9MB
pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (md5) Python Wheel cp36 2018-02-09 9MB
pysam-0.14.tar.gz (md5) Source 2018-02-09 2MB