pysam
Project description
pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Hashes for pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2aec5aebb90c1c1fe0f596984663773af7cc98ef1de0db047d93c99aac52177f |
|
MD5 | cd8bf2c35c9774fea3fd321eb6a26c6d |
|
BLAKE2b-256 | 967b845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8 |
Hashes for pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 02cb2d210be93782179e94565ee7531a7e4ff2ddff05967ed9c502445a7544ed |
|
MD5 | 1d2dac0fbe688e071d478041829c05be |
|
BLAKE2b-256 | f7536e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24 |
Hashes for pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6da96be7861ca95a7c4378ac15c2e9372b45d99a3f5360d88e21a9d45fe6718c |
|
MD5 | 79ac069bafa8641b77f261cef0c06b44 |
|
BLAKE2b-256 | 51c1474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20 |
Hashes for pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f0973c10a3377d5d8291aeebd03ce9a79192581903407b475223428b0843e063 |
|
MD5 | 2ddf7bacce5034ec2b7c08f8c2f87084 |
|
BLAKE2b-256 | 2bffa7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a |
Hashes for pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f08e3ee089a1691be837473a40eea097be7de3c066ce3ebc1e2d486d0ebda29c |
|
MD5 | ea3e1e560bbd1a33231246fdc2874073 |
|
BLAKE2b-256 | c90bca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5 |