pyteomics.pepxmltk 0.2.2
A utility for creation of pepXML files from Python objects and TandemXML files.
pyteomics.pepxmltk - a pepXML writer and Tandem2XML converter
pyteomics.pepxmltk is a module based on the pyteomics package that allows creation of pepXML files from Python objects of a certain structure. The structure corresponds to tokens generated by the pyteomics TandemXML parser.
This package provides a module that can be used for writing pepXML files from your Python code, as well as a command-line script for conversion, merging or filtering of X!Tandem files to pepXML. Unlike its analog from Trans-Proteomic Pipeline (TPP), the script is capable of handling non-standard enzymes.
Dependencies
- pyteomics
- numpy
- lxml
- jinja2
Links
- PyPI: https://pypi.python.org/pypi/pyteomics.pepxmltk
- BitBucket repo & issue tracker: https://bitbucket.org/markmipt/pyteomics.pepxmltk
- Mailing list: pyteomics@googlegroups.com
| File | Type | Py Version | Uploaded on | Size | |
|---|---|---|---|---|---|
| pyteomics.pepxmltk-0.2.2.tar.gz (md5) | Source | 2015-05-03 | 11KB | ||
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- Author: Mark Ivanov & Lev Levitsky
- Home Page: http://hg.theorchromo.ru/pyteomics
- License: License :: OSI Approved :: Apache Software License
- Requires jinja2, numpy, lxml, pyteomics
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Categories
- Intended Audience :: Science/Research
- Programming Language :: Python :: 2.7
- Programming Language :: Python :: 3
- Topic :: Education
- Topic :: Scientific/Engineering :: Bio-Informatics
- Topic :: Scientific/Engineering :: Chemistry
- Topic :: Scientific/Engineering :: Physics
- Topic :: Software Development :: Libraries
- Package Index Owner: levitsky
- DOAP record: pyteomics.pepxmltk-0.2.2.xml