Quickshear Defacing for Neuroimages
Project description
Quickshear uses a skull stripped version of an anatomical images as a reference to deface the unaltered anatomical image.
Usage:
quickshear.py [-h] anat_file mask_file defaced_file [buffer]
Quickshear defacing for neuroimages
positional arguments:
anat_file filename of neuroimage to deface
mask_file filename of brain mask
defaced_file filename of defaced output image
buffer buffer size (in voxels) between shearing plane and the brain
(default: 10.0)
optional arguments:
-h, --help show this help message and exit
For a full description, see the following paper:
[Schimke2011]
Schimke, Nakeisha, and John Hale. “Quickshear defacing for neuroimages.” Proceedings of the 2nd USENIX conference on Health security and privacy. USENIX Association, 2011.
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