scatrex

Map single-cell transcriptomes to copy number evolutionary trees.

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Project description

Map single-cell transcriptomes to copy number evolutionary trees. Check out the tutorial for more information.

Installation

$ pip install scatrex

SCATrEx uses JAX to perform automatic differentiation. By default, SCATrEx installs the CPU-only version of JAX, but we strongly recommend the use of GPU acceleration. Please follow the instructions in https://github.com/google/jax#pip-installation-gpu-cuda to install the GPU version of JAX.

Preprint

https://doi.org/10.1101/2021.11.04.467244

Project details

These details have not been verified by PyPI

Project links

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

This version

0.2.0

Jun 8, 2022

0.1.1

Jun 6, 2022

0.1.0

Jun 6, 2022

0.0.3

Nov 4, 2021

0.0.2

Nov 3, 2021

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scatrex-0.2.0.tar.gz (77.4 kB view hashes)

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Uploaded Jun 8, 2022 Python 3

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