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sequana 0.4.1

A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis

Python version:3.5 (and 2.7 without snakemake)
Online documentation:
 On readthedocs
Issues and bug reports:
 On github
How to cite:Desvillechabrol D, Bouchier C, Cokelaer T and Kennedy S. Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis [v1; no peer reviewed]. F1000Research 2016, 5:1767 (poster) (doi: 10.7490/f1000research.1112656.1)

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy…

Please see the documentation for an up-to-date status and documentation.

Docker images (experimental):

File Type Py Version Uploaded on Size
sequana-0.4.1.tar.gz (md5) Source 2017-07-20 12MB