Helper library for working with Stan models in Python
Project description
.. image:: https://travis-ci.org/hammerlab/stanity.svg
:target: https://travis-ci.org/hammerlab/stanity
:alt: build status
.. image:: https://coveralls.io/repos/github/hammerlab/stanity/badge.svg?branch=master
:target: https://coveralls.io/github/hammerlab/stanity
:alt: coverage
.. image:: https://badge.fury.io/py/stanity.svg
:target: https://badge.fury.io/py/stanity
stanity
=========
python convenience functions for working with Stan models (via pystan)
Functionality:
stanity.fit
thin wrapper around ``pystan.stan`` that caches compiled models
stanity.psisloo
thin wrapper around ``psisloo`` (implemented in https://github.com/avehtari/PSIS/blob/master/py/psis.py)
stanity.loo_compare
compare model fit using PSIS-LOO, similar to methods implemented in the R package loo
Installation
-------------
Install from pip:
::
pip install stanity
::
Or, from a git checkout, run:
::
pip install .
To run the tests:
::
nosetests
:target: https://travis-ci.org/hammerlab/stanity
:alt: build status
.. image:: https://coveralls.io/repos/github/hammerlab/stanity/badge.svg?branch=master
:target: https://coveralls.io/github/hammerlab/stanity
:alt: coverage
.. image:: https://badge.fury.io/py/stanity.svg
:target: https://badge.fury.io/py/stanity
stanity
=========
python convenience functions for working with Stan models (via pystan)
Functionality:
stanity.fit
thin wrapper around ``pystan.stan`` that caches compiled models
stanity.psisloo
thin wrapper around ``psisloo`` (implemented in https://github.com/avehtari/PSIS/blob/master/py/psis.py)
stanity.loo_compare
compare model fit using PSIS-LOO, similar to methods implemented in the R package loo
Installation
-------------
Install from pip:
::
pip install stanity
::
Or, from a git checkout, run:
::
pip install .
To run the tests:
::
nosetests